mpiBLAST: Open-Source Parallel BLAST
| Home | Support | Download | Site Map |

synergy
synergy
synergy
synergy





 

mpiBLAST Releases

Downloads in this area include all bug fixes available. Users who should probably use this version are:

  • New users
  • Users with production environments
  • Users who just want mpiBLAST to work

NEW: mpiBLAST-1.6.0 is now officially released.

mpiBLAST-1.6.0

mpiBLAST-1.6.0 is our major effort in enabling users to tackle grand sequence alignment problems on state-of-the-art massively parallel computers. It is now available for beta testing.

Packages File Size MD5 sum cryptographic signature
Source Code mpiBLAST-1.6.0.tgz 62MB mpiBLAST-1.6.0.tgz.md5
Recommended NCBI C Toolkits April 2009 (Already included in package.)

Short list of features:

  • Adopted a hierarchical scheduling architecture that signifcantly improves program scalability on massively parallel computers.
  • Updated NCBI BLAST support to a more recent version (2.2.20, released April 2009)
  • Resolved the performance issues when searching large query files.
  • Integrated support of IBM Blue Gene/L and Blue Gene/P systems.

Patches:

  • mpiBLAST-1.6.0-patch-100813
    • Fixed the compiling issue of NCBI toolkit on Mac OS X.
    • Fixed linking issues with OpenMPI (e.g., MPI::Datatype::free() undefined.)

See the README file inside the package for a list of run-time and configure options to get the best performance out of mpiBLAST.

 
 
| Edit | Print |